Labonté, J. M., M. A. Lever, K. J. Edwards, and B. N. Orcutt. 2017. Influence of igneous basement on deep sediment microbial diversity on the Eastern Juan de Fuca Ridge Flank. Frontiers in Microbiology, 8:1434. doi: 10.3389/fmicb.2017.01434
Stepanauskas, R., E. A. Fergusson, J. Brown, N. J. Poulton, B. Tupper, J. M. Labonté, E. D. Becraft, J. M. Brown, M. G. Pachiadaki, T. Povilaitis, B. P. Thompson, C. J. Mascena, W. K. Bellows, and Arvydas Lubys. 2017. Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles. Nature Communications. doi: s41467-017-00128-z
Labonté, J. M., B. K. Swan, B. Paulos, H. Luo, S. Koren, S. J. Hallam, M. B. Sullivan, T. Woyke, E. K. Wommack, and R. Stepanauskas. 2015. Single cell sequence based analysis of virus-host interactions in marine surface bacterioplankton. ISME J. 9, 2386–2399. doi: 10.1038/ismej.2015.48
Labonté, J. M., E. K. Field, M. Lau, E. Van Heerden, T. L. Kieft, T. C. Onstott, and R. Stepanauskas. Single cell genomics indicates horizontal gene transfer and viral infections in a deep subsurface Firmicutes population. Frontiers Microbiol. doi:10.3389/fmicb.2015.00349
Labonté, J. M., C. A. Suttle. 2013. Previously unknown and highly divergent ssDNA viruses populate the oceans. 2013. ISME J. 7, 2169–2177. doi: 10.1038/ismej.2013.110
Labonté, J. M. and C. A. Suttle. 2013. Metagenomic and whole-genome analysis reveals new lineages of gokushoviruses and biogeographic separation in the sea. Frontiers Microbiol. doi: 10.3389/fmicb.2013.00404
Labonté, J. M., S. J. Hallam, and C. A. Suttle. 2015. Previously unknown evolutionary groups dominate the ssDNA gokushoviruses in oxic and anoxic waters of a coastal marine environment. Frontiers in Microbiology. doi:10.3389/fmicb.2015.00315
Labonté, J. M., K. E. Reid, and C. A. Suttle. 2009. Phylogenetic analysis indicates evolutionary diversity and environmental segregation of marine podovirus DNA polymerase gene sequences. Appl Environ Microbiol 75:3634-3640. doi: 10.1128/AEM.02317-08
Deveau H., R. Barrangou, J. E. Garneau, J. Labonté, C. Fremaux, P. Boyaval, D. a Romero, P. Horvath, and S. Moineau. 2008. Phage response to CRISPR-encoded resistance in Streptococcus thermophilus. J Bacteriol 190:1390-400. doi: 10.1128/JB.01412-07
Le Bourgeois, P., M. Bugarel, N. Campo, M. L. Daveran-Mingot, J. Labonté, D. Lanfranchi, T. Lautier, C. Pages, and P. Ritzenthaler. 2007. The unconventional Xer recombination machinery of Streptococci/Lactococci. PLoS Genet. doi: 10.1371/journal.pgen.0030117
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